Table 2 Gene expression levels/CD3 in colon cancers compared with normal mucosa
Target gene expressionnTissuesp Value*T/NT ratio
Non-tumouralTumoural
Fas ligand (45)1390 (463–2055)2294 (964–3842) <0.001
MSS(31)1500 (274–2040)1731 (708–3376)0.011.7
MSI-H(14)1275 (750–2154)3305 (2031–7821)0.022.6
    p Value†0.68
Perforin (45)13.2 (8.1–17.9)19.3 (13.2–41.5) 0.002
MSS(31)13.5 (8.8–20.9)17.1 (11.3–35.1)0.071.2
MSI-H(14)8.9 (5.4–18.5)38.5 (18.5–69.0)0.0093.2
    p Value† 0.003
Granzyme A (45)1.6 (1.0–2.6)1.6 (1.0–2.0)10.72
MSS(31)1.6 (1.2–2.5)1.5 (.9–2.0)
MSI-H(14)1.6 (0.9–2.6)2.1 (1.6–3.5)
    p Value†
Granzyme B (45)5555 (2992–11 501)19 065 (14 440–30 586) <0.0001
MSS(31)5545 (2586–7640)16 289 (9396–23 507) <0.0001 3.4
MSI-H(14)7915 (4167–14 431)24758 (17 223–61 150)0.0064.1
    p Value†0.71
IL4(45)99 (48–421)238 (120–450)0.06
MSS(31)81 (46–421)238 (120–450)
MSI-H(14)124 (50–515)203 (91–471)
    p Value†
IL10 (45)227 (88–529)284 (199–527)0.06
MSS(31)250 (76–646)284 (203–509)1.7
MSI-H(14)154 (106–529)317 (143–654)1.2
    p Value†0.68
IL17 (45)0.6 (0.2–1.8)4.5 (1.8–11.5) <0.0001
MSS(31)0.5 (0.2–1.8)7.2 (2.3–18.8) <0.0001 13.7
MSI-H(14)1.4 (0.6–2.0)2.4 (0.4–4.4)0.301.4
    p Value† 0.002
Foxp3 (45)2.7 (1.7–4.0)15.6 (11.2–20.1) <0.001
MSS(31)2.6 (1.7–3.9)16.0 (13.7–21.0) <0.0001 6.8
MSI-H(14)3.1 (1.7–6.2)10.5 (3.9–19.7)0.073.2
    p Value†0.04
  • Results are expressed as median (first–third quartiles) of the ratio of target gene to CD3 mRNA copy numbers.

  • *p Value of the paired non-parametric comparisons between tumoural and non-tumoural tissues (Wilcoxon signed-rank test).

  • †p Value of the non-parametric comparisons between MSS and MSI-H phenotypes. After using the Bonferroni correction for multiple testing, p⩽0.003 was considered statistically significant and these values are indicated in bold.

  • Foxp3, forkhead box P3; IL, interleukin; MSS, microsatellite stability; MSI-H, high-frequency microsatellite instability; NT, non-tumoural; T, tumoural.